Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| UCEC | rs4710827 | chr6:170749242 | A/G | 3.35E-6 | 166 | 13.93 | 25.3 | 21.5 | KM Plot |
| UCEC | rs4732008 | chr7:133896858 | C/G | 4.24E-5 | 171 | 22.85 | 21.5 | 14.7 | KM Plot |
| UCEC | rs4794063 | chr17:45804494 | C/T | 2.02E-5 | 167 | 22.7 | 22.88 | 15.77 | KM Plot |
| UCEC | rs4852603 | chr2:81290284 | C/T | 7.24E-5 | 174 | 18 | 23.67 | 22.63 | KM Plot |
| UCEC | rs4889494 | chr16:30834378 | C/T | 9.99E-9 | 171 | 4.5 | 18.03 | 22.75 | KM Plot |
| UCEC | rs4889510 | chr16:30833425 | G/C | 8.85E-9 | 172 | 4.5 | 18.03 | 22.8 | KM Plot |
| UCEC | rs4889511 | chr16:30835092 | G/A | 9.99E-9 | 171 | 4.5 | 18.03 | 22.75 | KM Plot |
| UCEC | rs4903581 | chr14:77852622 | G/T | 4.5E-8 | 174 | 21.1 | 29.42 | 5.97 | KM Plot |
| UCEC | rs4932302 | chr15:90752898 | C/T | 2.66E-5 | 174 | 18.67 | 20.9 | 23.97 | KM Plot |
| UCEC | rs4933401 | chr10:88368715 | C/T | 5.55E-5 | 172 | 22.97 | 20.33 | 18 | KM Plot |
| UCEC | rs4944852 | chr11:73372107 | A/C | 3.84E-7 | 172 | 21.5 | 32.75 | 4.33 | KM Plot |
| UCEC | rs4960066 | chr6:5124737 | A/G | 3.2E-9 | 174 | 22.7 | 23.35 | 5.97 | KM Plot |
| UCEC | rs508192 | chr17:30315147 | C/T | 4.18E-6 | 174 | 14.23 | 22.78 | 22.63 | KM Plot |
| UCEC | rs55655009 | chr2:180817902 | A/AT | 0.000131 | 173 | 22.57 | 20.93 | 13.63 | KM Plot |
| UCEC | rs55723770 | chr6:5109981 | C/T | 3.2E-9 | 174 | 22.75 | 22.63 | 5.97 | KM Plot |